2024-09-26 |
Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize [RESOURCES] |
Tibbs-Cortes, L. E., Guo, T., Andorf, C. M., Li, X., Yu, J. |
|
2024-09-26 |
Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs [RESOURCES] |
Anderson, A. G., Moyers, B. A., Loupe, J. M., Rodriguez-Nunez, I., Felker, S. A., Lawlor, J. M. J., Bunney, W. E., Bunney, B. G., Cartagena, P. M., Sequeira, A., Watson, S. J., Akil, H., Mendenhall, E. M., Cooper, G. M., Myers, R. M. |
|
2024-09-26 |
A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types [RESOURCES] |
Peng, F., Nordgren, C. E., Murray, J. I. |
|
2024-09-26 |
Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries [METHODS] |
Wiens, M., Farahani, H., Scott, R. W., Underhill, T. M., Bashashati, A. |
|
2024-09-26 |
Genetic complexity of killer-cell immunoglobulin-like receptor genes in human pangenome assemblies [METHODS] |
Hung, T.-K., Liu, W.-C., Lai, S.-K., Chuang, H.-W., Lee, Y.-C., Lin, H.-Y., Hsu, C.-L., Chen, C.-Y., Yang, Y.-C., Hsu, J. S., Chen, P.-L. |
|
2024-09-26 |
A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data [METHODS] |
Chen, S., Wang, J., Jung, I., Qiu, Z., Gao, X., Li, Y. |
|
2024-09-26 |
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma [METHODS] |
Müller, J., Hartwig, C., Sonntag, M., Bitzer, L., Adelmann, C., Vainshtein, Y., Glanz, K., Decker, S. O., Brenner, T., Weber, G. F., von Haeseler, A., Sohn, K. |
|
2024-09-26 |
A simple method for finding related sequences by adding probabilities of alternative alignments [METHODS] |
Frith, M. C. |
|
2024-09-26 |
Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damage [RESEARCH] |
Lowry, E., Wang, Y., Dagan, T., Mitchell, A. |
|
2024-09-26 |
Differences in activity and stability drive transposable element variation in tropical and temperate maize [RESEARCH] |
Ou, S., Scheben, A., Collins, T., Qiu, Y., Seetharam, A. S., Menard, C. C., Manchanda, N., Gent, J. I., Schatz, M. C., Anderson, S. N., Hufford, M. B., Hirsch, C. N. |
|
2024-09-26 |
Genome-wide patterns of selection-drift variation strongly associate with organismal traits across the green plant lineage [RESEARCH] |
Uthanumallian, K., Del Cortona, A., Coelho, S. M., De Clerck, O., Duchene, S., Verbruggen, H. |
|
2024-09-26 |
Widespread natural selection on metabolite levels in humans [RESEARCH] |
Timasheva, Y., Lepik, K., Liska, O., Papp, B., Kutalik, Z. |
|
2024-08-21 |
Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana [RESOURCES] |
Denyer, T., Wu, P.-J., Colt, K., Abramson, B. W., Pang, Z., Solansky, P., Mamerto, A., Nobori, T., Ecker, J. R., Lam, E., Michael, T. P., Timmermans, M. C. P. |
|
2024-08-21 |
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs [METHODS] |
Kuronen, J., Horsfield, S. T., Pöntinen, A. K., Mallawaarachchi, S., Arredondo-Alonso, S., Thorpe, H., Gladstone, R. A., Willems, R. J. L., Bentley, S. D., Croucher, N. J., Pensar, J., Lees, J. A., Tonkin-Hill, G., Corander, J. |
|
2024-08-21 |
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes [RESOURCES] |
Xiang, G., He, X., Giardine, B. M., Isaac, K. J., Taylor, D. J., McCoy, R. C., Jansen, C., Keller, C. A., Wixom, A. Q., Cockburn, A., Miller, A., Qi, Q., He, Y., Li, Y., Lichtenberg, J., Heuston, E. F., Anderson, S. M., Luan, J., Vermunt, M. W., Yue, F., |
|
2024-08-21 |
Delineating yeast cleavage and polyadenylation signals using deep learning [METHODS] |
Stroup, E. K., Ji, Z. |
|
2024-08-21 |
Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences [METHODS] |
Xu, C., Bao, S., Wang, Y., Li, W., Chen, H., Shen, Y., Jiang, T., Zhang, C. |
|
2024-08-21 |
A gene regulatory network-aware graph learning method for cell identity annotation in single-cell RNA-seq data [METHODS] |
Zhao, M., Li, J., Liu, X., Ma, K., Tang, J., Guo, F. |
|
2024-08-21 |
CodonBERT large language model for mRNA vaccines [METHODS] |
Li, S., Moayedpour, S., Li, R., Bailey, M., Riahi, S., Kogler-Anele, L., Miladi, M., Miner, J., Pertuy, F., Zheng, D., Wang, J., Balsubramani, A., Tran, K., Zacharia, M., Wu, M., Gu, X., Clinton, R., Asquith, C., Skaleski, J., Boeglin, L., Chivukula, S., |
|
2024-08-21 |
High-fidelity, large-scale targeted profiling of microsatellites [METHODS] |
Loh, C. A., Shields, D. A., Schwing, A., Evrony, G. D. |
|
2024-08-21 |
The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution [RESEARCH] |
Li, X., Mank, J. E., Ban, L. |
|
2024-08-21 |
The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores [RESEARCH] |
Liu, Y., Zhai, G., Su, J., Gong, Y., Yang, B., Lu, Q., Xi, L., Zheng, Y., Cao, J., Liu, H., Jin, J., Zhang, Z., Yang, Y., Zhu, X., Wang, Z., Gong, G., Mei, J., Yin, Z., Gozlan, R. E., Xie, S., Han, D. |
|
2024-07-24 |
Corrigendum: Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromere [CORRIGENDUM] |
Wong, L. H., Brettingham-Moore, K. H., Chan, L., Quach, J. M., Anderson, M. A., Northrop, E. L., Hannan, R., Saffery, R., Shaw, M. L., Williams, E., Choo, K. H. A. |
|
2024-07-24 |
DEAD box RNA helicases are pervasive protein kinase interactors and activators [RESOURCES] |
Hirth, A., Fatti, E., Netz, E., Acebron, S. P., Papageorgiou, D., Svorinic, A., Cruciat, C.-M., Karaulanov, E., Gopanenko, A., Zhu, T., Sinning, I., Krijgsveld, J., Kohlbacher, O., Niehrs, C. |
|
2024-07-24 |
Global compositional and functional states of the human gut microbiome in health and disease [RESOURCES] |
Lee, S., Portlock, T., Le Chatelier, E., Garcia-Guevara, F., Clasen, F., Onate, F. P., Pons, N., Begum, N., Harzandi, A., Proffitt, C., Rosario, D., Vaga, S., Park, J., von Feilitzen, K., Johansson, F., Zhang, C., Edwards, L. A., Lombard, V., Gauthier, F. |
|
2024-07-24 |
Accurate estimation of pathway activity in single cells for clustering and differential analysis [METHODS] |
Davis, D., Wizel, A., Drier, Y. |
|
2024-07-24 |
Accurate allocation of multimapped reads enables regulatory element analysis at repeats [METHODS] |
Morrissey, A., Shi, J., James, D. Q., Mahony, S. |
|
2024-07-24 |
Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine [METHODS] |
Yan, B., Wang, D., Ettwiller, L. |
|
2024-07-24 |
Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters [METHODS] |
Ulrich, J.-U., Renard, B. Y. |
|
2024-07-24 |
Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States [RESEARCH] |
Bellinzona, G., Nardi, T., Castelli, M., Batisti Biffignandi, G., Adjou, K., Betson, M., Blanchard, Y., Bujila, I., Chalmers, R., Davidson, R., D'Avino, N., Enbom, T., Gomes, J., Karadjian, G., Klotz, C., Östlund, E., Plutzer, J., Rimhanen-Fin |
|
2024-07-24 |
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins [RESEARCH] |
Vakirlis, N., Kupczok, A. |
|
2024-07-24 |
Causes and consequences of a complex recombinational landscape in the ant Cardiocondyla obscurior [RESEARCH] |
Errbii, M., Gadau, J., Becker, K., Schrader, L., Oettler, J. |
|
2024-07-24 |
Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles [RESEARCH] |
Wang, X., Heckel, G. |
|
2024-07-24 |
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue [RESEARCH] |
Venkat, A., Carlino, M. J., Lawton, B. R., Prasad, M. L., Amodio, M., Gibson, C. E., Zeiss, C. J., Youlten, S. E., Krishnaswamy, S., Krause, D. S. |
|
2024-07-24 |
Single-cell discovery of m6A RNA modifications in the hippocampus [RESEARCH] |
Feng, S., Tellaetxe-Abete, M., Zhang, Y., Peng, Y., Zhou, H., Dong, M., Larrea, E., Xue, L., Zhang, L., Koziol, M. J. |
|
2024-07-24 |
Large-scale genomic analysis of the domestic dog informs biological discovery [MINI-REVIEW] |
Buckley, R. M., Ostrander, E. A. |
|
2024-06-25 |
A harmonized public resource of deeply sequenced diverse human genomes [RESOURCES] |
Koenig, Z., Yohannes, M. T., Nkambule, L. L., Zhao, X., Goodrich, J. K., Kim, H. A., Wilson, M. W., Tiao, G., Hao, S. P., Sahakian, N., Chao, K. R., Walker, M. A., Lyu, Y., gnomAD Project Consortium, Rehm, H. L., Neale, B. M., Talkowski, M. E., Daly, M. J |
|
2024-06-25 |
Erratum: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic [ERRATUM] |
Shaw, J., Yu, Y. W. |
|
2024-06-25 |
Simulation of nanopore sequencing signal data with tunable parameters [METHODS] |
Gamaarachchi, H., Ferguson, J. M., Samarakoon, H., Liyanage, K., Deveson, I. W. |
|
2024-06-25 |
Identifying genes within pathways in unannotated genomes with PaGeSearch [METHODS] |
Won, S., Yu, J., Kim, H. |
|
2024-06-25 |
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes [METHODS] |
Bruna, T., Lomsadze, A., Borodovsky, M. |
|
2024-06-25 |
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA [METHODS] |
Gabriel, L., Bruna, T., Hoff, K. J., Ebel, M., Lomsadze, A., Borodovsky, M., Stanke, M. |
|
2024-06-25 |
Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (Ostrinia furnacalis) [RESEARCH] |
Lv, P., Yang, X., Zhao, X., Zhao, Z., Du, J. |
|
2024-06-25 |
Semiconservative transmission of DNA N6-adenine methylation in a unicellular eukaryote [RESEARCH] |
Sheng, Y., Wang, Y., Yang, W., Wang, X. Q., Lu, J., Pan, B., Nan, B., Liu, Y., Ye, F., Li, C., Song, J., Dou, Y., Gao, S., Liu, Y. |
|
2024-06-25 |
Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary [RESEARCH] |
Srivastav, S. P., Feschotte, C., Clark, A. G. |
|
2024-06-25 |
Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice [RESEARCH] |
Boukas, L., Luperchio, T. R., Razi, A., Hansen, K. D., Bjornsson, H. T. |
|
2024-06-25 |
Machine learning identifies activation of RUNX/AP-1 as drivers of mesenchymal and fibrotic regulatory programs in gastric cancer [RESEARCH] |
Razavi-Mohseni, M., Huang, W., Guo, Y. A., Shigaki, D., Ho, S. W. T., Tan, P., Skanderup, A. J., Beer, M. A. |
|
2024-06-25 |
Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy [RESEARCH] |
Chen, L., Kong, X., Johnston, K. G., Mortazavi, A., Holmes, T. C., Tan, Z., Yokomori, K., Xu, X. |
|
2024-06-25 |
Toward telomere-to-telomere cat genomes for precision medicine and conservation biology [MINI-REVIEW] |
Murphy, W. J., Harris, A. J. |
|
2024-05-16 |
A new framework for exploratory network mediator analysis in omics data [METHODS] |
Cai, Q., Fu, Y., Lyu, C., Wang, Z., Rao, S., Alvarez, J. A., Bai, Y., Kang, J., Yu, T. |
|
2024-05-16 |
Probabilistic association of differentially expressed genes with cis-regulatory elements [METHODS] |
Roberts, B. S., Anderson, A. G., Partridge, E. C., Cooper, G. M., Myers, R. M. |
|
2024-05-16 |
Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples [METHODS] |
Ji, S., Zhu, T., Sethia, A., Wang, W. |
|
2024-05-16 |
Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a Drosophila knock-in tauopathy model [RESEARCH] |
Bukhari, H., Nithianandam, V., Battaglia, R. A., Cicalo, A., Sarkar, S., Comjean, A., Hu, Y., Leventhal, M. J., Dong, X., Feany, M. B. |
|
2024-05-16 |
Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence [RESEARCH] |
Ferguson, S., Jones, A., Murray, K., Andrew, R., Schwessinger, B., Borevitz, J. |
|
2024-05-16 |
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy [RESEARCH] |
Iyer, D. P., Moyon, L., Wittler, L., Cheng, C.-Y., Ringeling, F. R., Canzar, S., Marsico, A., Bulut-Karslioglu, A. |
|
2024-05-16 |
Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription [RESEARCH] |
Keenan, C. R., Coughlan, H. D., Iannarella, N., Tapia del Fierro, A., Keniry, A., Johanson, T. M., Chan, W. F., Garnham, A. L., Whitehead, L. W., Blewitt, M. E., Smyth, G. K., Allan, R. S. |
|
2024-05-16 |
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions [RESEARCH] |
Joosten, S. E. P., Gregoricchio, S., Stelloo, S., Yapıcı, E., Huang, C.-C. F., Yavuz, K., Donaldson Collier, M., Morova, T., Altintas, U. B., Kim, Y., Canisius, S., Moelans, C. B., van Diest, P. J., Korkmaz, G., Lack, N. A., Vermeule |
|
2024-05-16 |
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity [PERSPECTIVE] |
Tierney, J. A. S., Swirski, M., Tjeldnes, H., Mudge, J. M., Kufel, J., Whiffin, N., Valen, E., Baranov, P. V. |
|
2024-05-16 |
Navigating the landscape of epitranscriptomics and host immunity [REVIEW] |
Huang, E., Frydman, C., Xiao, X. |
|
2024-04-26 |
Corrigendum: A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data [CORRIGENDUM] |
Qin, F., Cai, G., Amos, C. I., Xiao, F. |
|
2024-04-26 |
Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches [METHODS] |
Lee, M., Guo, Q., Kim, M., Choi, J., Segura, A., Genceroglu, A., LeBlanc, L., Ramirez, N., Jang, Y. J., Jang, Y., Lee, B.-K., Marcotte, E. M., Kim, J. |
|
2024-04-26 |
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals [RESOURCES] |
Schnitzler, C. E., Chang, E. S., Waletich, J., Quiroga-Artigas, G., Wong, W. Y., Nguyen, A.-D., Barreira, S. N., Doonan, L. B., Gonzalez, P., Koren, S., Gahan, J. M., Sanders, S. M., Bradshaw, B., DuBuc, T. Q., Febrimarsa, , de Jong, D., Nawrocki, E. P., |
|
2024-04-26 |
Phased nanopore assembly with Shasta and modular graph phasing with GFAse [METHODS] |
Lorig-Roach, R., Meredith, M., Monlong, J., Jain, M., Olsen, H. E., McNulty, B., Porubsky, D., Montague, T. G., Lucas, J. K., Condon, C., Eizenga, J. M., Juul, S., McKenzie, S. K., Simmonds, S. E., Park, J., Asri, M., Koren, S., Eichler, E. E., Axel, R., |
|
2024-04-26 |
Robust chromatin state annotation [METHODS] |
Foroozandeh Shahraki, M., Farahbod, M., Libbrecht, M. W. |
|
2024-04-26 |
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species [RESEARCH] |
Plessy, C., Mansfield, M. J., Bliznina, A., Masunaga, A., West, C., Tan, Y., Liu, A. W., Grasic, J., del Rio Pisula, M. S., Sanchez-Serna, G., Fabrega-Torrus, M., Ferrandez-Roldan, A., Roncalli, V., Navratilova, P., Thompson, E. M., Onuma, T., Nishida, H. |
|
2024-04-26 |
Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites [RESEARCH] |
Reis-Cunha, J. L., Pimenta-Carvalho, S. A., Almeida, L. V., Coqueiro-dos-Santos, A., Marques, C. A., Black, J. A., Damasceno, J., McCulloch, R., Bartholomeu, D. C., Jeffares, D. C. |
|
2024-04-26 |
Experimentally evolving Drosophila erecta populations may fail to establish an effective piRNA-based host defense against invading P-elements [RESEARCH] |
Selvaraju, D., Wierzbicki, F., Kofler, R. |
|
2024-04-26 |
Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation [RESEARCH] |
Mercier, B. C., Labaronne, E., Cluet, D., Guiguettaz, L., Fontrodona, N., Bicknell, A., Corbin, A., Wencker, M., Aube, F., Modolo, L., Jouravleva, K., Auboeuf, D., Moore, M. J., Ricci, E. P. |
|
2024-04-26 |
Systematic identification and characterization of exon-intron circRNAs [RESEARCH] |
Zhong, Y., Yang, Y., Wang, X., Ren, B., Wang, X., Shan, G., Chen, L. |
|
2024-04-26 |
Inference of selective forces on house mouse genomes during secondary contact in East Asia [RESEARCH] |
Fujiwara, K., Kubo, S., Endo, T., Takada, T., Shiroishi, T., Suzuki, H., Osada, N. |
|
2024-04-26 |
A systematic review on the biochemical threshold of mitochondrial genetic variants [REVIEW] |
Smith, K. K., Moreira, J. D., Wilson, C. R., Padera, J. O., Lamason, A. N., Xue, L., Gopal, D. M., Flynn, D. B., Fetterman, J. L. |
|
2023-08-25 |
Efficient minimizer orders for large values of k using minimum decycling sets [METHODS] |
Pellow, D., Pu, L., Ekim, B., Kotlar, L., Berger, B., Shamir, R., Orenstein, Y. |
|
2023-08-25 |
Unsupervised contrastive peak caller for ATAC-seq [METHODS] |
Vu, H. T. H., Zhang, Y., Tuteja, G., Dorman, K. S. |
|
2023-08-25 |
Leveraging protein language models for accurate multiple sequence alignments [METHODS] |
McWhite, C. D., Armour-Garb, I., Singh, M. |
|
2023-08-25 |
Fast inference of genetic recombination rates in biobank scale data [METHODS] |
Naseri, A., Yue, W., Zhang, S., Zhi, D. |
|
2023-08-25 |
Partial alignment of multislice spatially resolved transcriptomics data [METHODS] |
Liu, X., Zeira, R., Raphael, B. J. |
|
2023-08-25 |
Efficient mapping of accurate long reads in minimizer space with mapquik [METHODS] |
Ekim, B., Sahlin, K., Medvedev, P., Berger, B., Chikhi, R. |
|
2023-08-25 |
Aligning distant sequences to graphs using long seed sketches [METHODS] |
Joudaki, A., Meterez, A., Mustafa, H., Groot Koerkamp, R., Kahles, A., Rätsch, G. |
|
2023-08-25 |
Efficient taxa identification using a pangenome index [METHODS] |
Ahmed, O., Rossi, M., Boucher, C., Langmead, B. |
|
2023-08-25 |
Modeling and predicting cancer clonal evolution with reinforcement learning [METHODS] |
Ivanovic, S., El-Kebir, M. |
|
2023-08-25 |
A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings [METHODS] |
Zhang, L., Abhari, N., Colijn, C., Wu, Y. |
|
2023-08-25 |
Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash [METHODS] |
Rahman Hera, M., Pierce-Ward, N. T., Koslicki, D. |
|
2023-08-25 |
Improving quartet graph construction for scalable and accurate species tree estimation from gene trees [METHODS] |
Han, Y., Molloy, E. K. |
|
2023-08-25 |
Leveraging family data to design Mendelian randomization that is provably robust to population stratification [METHODS] |
LaPierre, N., Fu, B., Turnbull, S., Eskin, E., Sankararaman, S. |
|
2023-08-25 |
Ultrafast genome-wide inference of pairwise coalescence times [METHODS] |
Schweiger, R., Durbin, R. |
|
2023-08-25 |
Entropy predicts sensitivity of pseudorandom seeds [METHODS] |
Maier, B. D., Sahlin, K. |
|
2023-08-25 |
Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models [METHODS] |
Liu, Y., Li, X. C., Rashidi Mehrabadi, F., Schäffer, A. A., Pratt, D., Crawford, D. R., Malikic, S., Molloy, E. K., Gopalan, V., Mount, S. M., Ruppin, E., Aldape, K. D., Sahinalp, S. C. |
|
2023-08-25 |
Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic [METHODS] |
Shaw, J., Yu, Y. W. |
|
2023-08-25 |
Assessing transcriptomic reidentification risks using discriminative sequence models [METHODS] |
Sadhuka, S., Fridman, D., Berger, B., Cho, H. |
|
2023-08-25 |
Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT [METHODS] |
Cracco, A., Tomescu, A. I. |
|
2023-08-25 |
Enabling tradeoffs in privacy and utility in genomic data Beacons and summary statistics [METHODS] |
Venkatesaramani, R., Wan, Z., Malin, B. A., Vorobeychik, Y. |
|
2023-08-25 |
Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2 [METHODS] |
Baker, D. N., Langmead, B. |
|
2023-08-25 |
Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model [METHODS] |
Sanaullah, A., Zhi, D., Zhang, S. |
|
2023-07-21 |
Discordant calls across genotype discovery approaches elucidate variants with systematic errors [RESOURCES] |
Atkinson, E. G., Artomov, M., Loboda, A. A., Rehm, H. L., MacArthur, D. G., Karczewski, K. J., Neale, B. M., Daly, M. J. |
|
2023-07-21 |
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe [METHODS] |
Belcour, A., Got, J., Aite, M., Delage, L., Collen, J., Frioux, C., Leblanc, C., Dittami, S. M., Blanquart, S., Markov, G. V., Siegel, A. |
|
2023-07-21 |
Genealogical inference and more flexible sequence clustering using iterative-PopPUNK [METHODS] |
Zhao, B., Lees, J. A., Wu, H., Yang, C., Falush, D. |
|
2023-07-21 |
Genome skimming with nanopore sequencing precisely determines global and transposon DNA methylation in vertebrates [METHODS] |
Faulk, C. |
|
2023-07-21 |
Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets [METHODS] |
Jourdain, J., Barasc, H., Faraut, T., Calgaro, A., Bonnet, N., Marcuzzo, C., Suin, A., Barbat, A., Hoze, C., Besnard, F., Taussat, S., Grohs, C., Kuchly, C., Iampietro, C., Donnadieu, C., Pinton, A., Boichard, D., Capitan, A. |
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2023-07-21 |
Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data [METHODS] |
Song, L., Bai, G., Liu, X. S., Li, B., Li, H. |
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2023-07-21 |
Debiased personalized gene coexpression networks for population-scale scRNA-seq data [METHODS] |
Lu, S., Keles, S. |
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